Visualizations of expressionSet Bioconductor object

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Maintainer Laure Cougnaud <laure.cougnaud@openanalytics.eu>

Install

To install this package, start R and enter:

install.packages("esetVis", repos = "http://repos.openanalytics.eu", type = "source")

Documentation

No vignettes available
Reference Manual

Details

Depends
Imports
mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices
Suggests
ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment
System Requirements
License GPL-3
URL

Package Downloads

Package source esetVis_1.1.1.tar.gz
Windows binary (32- & 64-bit) Not Available
MacOS X 10.6 (Snow Leopard) binary Not Available